Introduction to the analysis of NGS data

Introduction to the analysis of NGS data

Target Audience:

Clemenspoort, Ghent

25 May 2020

General context

This training is an introduction to 'Bulk RNA-Seq analysis for differential expression', Hands-on introduction to NGS variant analysis', and 'Hands on introduction to ChIP-Seq analysis'. If you want to follow one of these trainings and you have no experience with NGS data you should follow this introduction first. 

Objectives

This training is an introduction to a series of trainings on the analysis of Next Generation Sequencing data. This training is intended for newbies to the field and will teach them all background knowledge required to successfully complete the advanced NGS analysis trainings. To this end the training will give an overview of:
- The Illumina platform
- NGS data formats and file handling
- Quality control of NGS data
- Mapping of NGS data
- Supporting IT: Galaxy and GenePattern platform

Course materials
Extra information
  • This course is free for VIB participants
  • Registration fee for non-VIB academics is 50 euro.
  • Registration fee for industry is 300 euro.
  • Note that upon no show without valid justification you will be blacklisted for the VIB training program for 1 year. Click here for more information.

Trainers

Janick Mathys

VIB Bioinformatics Core training coordinator

Contact Janick Mathys :

Program

-

The Illumina platform, applications  and data formats
Checking the quality of your data using FASTQC + exercise

-

Quality control + exercise
Mapping + exercise
Visualization of mapping results + exercise
Checking the quality of the mapping + exercise

Practical info

25 May 2020

Clemenspoort Gent

Overwale 3
9000 Ghent
Belgium

25 May 2020

Clemenspoort Gent
Public transport

The train station Ghent St-Pieters is only 250 m away. We have 40 bike lots.

25 May 2020

Clemenspoort Gent
Parking

We offer parking lots (1.20 € per hour). GPS address: Sint-Denijslaan 251.
Please take the neem the exit SPORTHAL HoGent (not Campus HoGent) and drive all the way to the end, so past the parking slots of HoGent.

25 May 2020

Clemenspoort Gent
Location contact

+32 476 46 10 40

info@clemenspoort.be

Contact

VIB training
Tel: +32 9 244 66 11
Mail: training@vib.be