BePa@VIB Proteomics Summer School
BePa@VIB Proteomics Summer School
Mo 26/08/2024 - Fr 30/08/2024
General context
Many researchers use proteomics as a research tool. BePA (Belgian Proteomics Association) is organizing workshops for these users in collaboration with VIB. A broad selection of proteomics experts will go through the entire workflow from sample preparation, over data acquisition to data analysis. At the end of the course, attendees will better understand the dos and don’ts in proteomics and be able to design their own experiment in order to find an answer to their protein-related questions.
This summer school is organized with the support of VIB, the Doctoral School of Ghent University and Thermo Fisher Scientific.
! Cancellations must be done before July 1st. Later cancellations will be subject to a cancellation fee of €50 !
The summer school will show researchers what the capabilities of proteomics are. By focusing on the different steps of a robust experimental design, they will learn the shortest route to answer their biological questions on proteins.
Trainers
An Staes
An Staes is mass spectrometry proteomics expert at the Proteomics Core at VIB and VIB Center for Medical Biotechnology. Her research focuses on implementing and developing mass spectrometry driven methodologies in proteomics.
Gerben Menschaert
Dr. Gerben Menschaert is Guest Professor at the Faculty of Bioscience Engineering within the BioBix Lab for Bioinformatics and Computational Genomics. His research focusses on integration of mass spectrometry and sequencing in a proteogenomics setup.
Kris Gevaert
Dr. Kris Gevaert is Senior Full Professor of Proteomics at Ghent University, and Group Leader at the VIB Center for Medical Biotechnology.
Lennart Martens
Dr. Lennart Martens is Senior Full Professor of Systems Biology at Ghent University, and Group Leader at the VIB Center for Medical Biotechnology. His research focuses on advanced (machine learning) algorithms for proteomics data interpretation and exploration.
Lieven Clement
Lieven Clement is Associate Professor of Statistical Genomics at Ghent University. His research focuses on developing statistical methods and open source tools for differential omics data analysis.
Maarten Dhaenens
Dr. Maarten Dhaenens is Executive PI at ProGenTomics (Lab of Pharmaceutical Biotechnology) and President of the Belgian Proteomics Association
Sven Eyckerman
Dr. Sven Eyckerman is Associate Professor at Ghent University and Expert Scientist at the VIB. His team focuses on tools and technologies for the study of human protein complexes.
Program
- Day 1: Basic concepts-Sample preparation-Experimental design-Data dependent acquisition concepts
- Day2: Data dependent acquisition: identification
- Day3: Data independent acquisition: basic concepts & data analysis
- Day4: Quantification
- Day 5: Proteomics applications
8h15-9h00 Registration and good morning coffee
9h00-9h15 Welcome (An Staes)
9h15-10h15 Basic concepts of LC-MS driven proteomics (Francis Impens)
10h15-11h15 Sample preparation: the basics (Francis Impens)
11h15-12h15 Experimental design (Lieven Clement)
12h15-13h00 Flash presentation (1min/person)
13h00-14h00 LUNCH
14h00-15h00 LC separation in LC-MS (Jeff Op De Beeck Sponsored talk Thermo Fisher Scientific)
15h00-15h30 BREAK
15h30-16h45 Data dependent acquisition: the basics and instrument design (An Staes)
8h15-9h00 Registration and good morning coffee
9h00-10h00 DDA: The theory of identification (Lennart Martens)
10h00-10h30 BREAK
10h30-12h00 DDA ID: practical (Lennart Martens)
12h00-13h00 LUNCH
13h00-14h30 DDA ID: practical II (Lennart Martens)
14h30-15h00 BREAK
15h00-17h00 DDA ID: practical III (Daria Fijalkowska)
8h15-9h00 Registration and good morning coffee
9h00-10h30 Data Independent acquisition: the basics (Maarten Dhaenens & An Staes)
10h30-12h30 DIA: Data analysis (Maarten Dhaenens & An Staes)
12h30-13h30 LUNCH
13h30-15h00 DIA ID: practical I (Maarten Dhaenens & An Staes)
15h00-15h30 BREAK
15h30-17h00 DIA ID: practical II (Maarten Dhaenens & An Staes)
8h15-9h00 Registration and good morning coffee
9h00-10h00 DDA: Quantification I - Background on preprocessing (Lieven Clement)
10h00-10h30 BREAK
10h30-12h00 DDA: Hands-on quantification - preprocessing (Lieven Clement)
12h00-13h00 LUNCH
13h00-15h00 DDA: Quantification II - Background on differential analysis and experimental design + Hands-on (Lieven Clement)
15h00-15h30 BREAK
15h30-16h30 DDA: Hands-on quantification of complex designs (Lieven Clement)
16h30-17h30 Visit to the VIB Proteomics core
17h30- Social event
8h15-9h00 Registration and good morning coffee
9h00-9h45 Proteomics applications: N-terminal proteomics (Kris Gevaert)
9h45-10h30 Proteomics applications: multi-omics (Gerben Menschaert)
10h30-11h00 BREAK
12h00-13h00 LUNCH
11h00-11h45 Proteomics applications: AP-MS (Sven Eyckerman)
11h45-12h30 Proteomics applications: Spatial omics (Simon Devos)
12h30-13h30 LUNCH
13h30-14h15 Single cell (Marcel Bühler)
14h15-15h00 Clinical proteomics (Esperanza Fernandez)
15h00-15h30 BREAK
15h30-16h15 Immunopeptidomics (Francis Impens)
16h15-16h30 Concluding remarks
Practical info
26 August 2024 - 30 August 2024
Ghent - Bio-Accelerator Meeting Center
Technologiepark 21
9052 Zwijnaarde
Belgium
26 August 2024 - 30 August 2024
Ghent - Bio-Accelerator Meeting Center
From Ghent Sint-Pieters station, you can take bus 49, 50 or 70 to Technologiepark. Please check Routeplanner De Lijn for schedules.
26 August 2024 - 30 August 2024
Ghent - Bio-Accelerator Meeting Center
From September 2021 onwards, there is only one entrance to Technologiepark. You need to take a ticket at the entrance that can be validated at the reception desk of the Bio-Accelerator building. Parking will only be allowed on regular parking spots (for instance in front of the building) and in the new parking tower. Parking alongside the roads or on other places where there is no regular parking is prohibited and after initial warnings fines will be issued (50 euro).
26 August 2024 - 30 August 2024
Ghent - Bio-Accelerator Meeting Center
+32 9 328 19 02
info@bio-accelerator.com
Ghent-Bio-Accelerator Meeting Center - Marc Van Montagu room