Introduction to Git & GitHub

hands-on
research data management
basic bioinformatics
ELIXIR
live training

Introduction to Git & GitHub

Target Audience:
VIB PhD student
VIB postdoc
VIB staff scientist
VIB group leader or expert
VIB administrative support
VIB technical support
Flemish academic or researcher
Non-Flemish academic or researcher
Industry professional
Location:

Leuven - Park Inn by Radisson

Duration:

11 & 12 September

General context

This workshop will take you through the basic use of Git and GitHub. Git is a free and open source distributed version-control system designed to maintain code, track changes, recover old versions and collaborate with other developers. 

Learning outcomes

Get you started with Git from zero (note that if you already use Git, this workshop will be too basic for you). We'll explore Git on the command-line and its interaction with GitHub. 

  • Introduction, set-up & configurations
  • Working locally: Create a repository, clone, edit, staging commits, commit & push
  • Working with your history & logs
  • Working in a project: Branching & pull requests
  • Collaborate with other people in your project

During the workshop we also briefly discuss how you can setup a collaboration project.  

Event intended for

This course is intended for researchers who are learning or using a programming language (R, Python, ...) and might have an existing project with code or text files that need track of changes. If you intend to make your code collaborative, bonus points for you!

Required skills

IMPORTANT! Some basic knowledge of the command-line is STRONGLY advised for this course (e.g. this tutorial). 

Trainers

Bruna Piereck
VIB Training & Conferences - Trainer picture - Bruna Piereck
VIB Training & Conferences / ELIXIR, BE

Bruna Piereck is a bioinformatics trainer at VIB and ELIXIR-BE training coordinator deputy. She obtained a Master and PhD degree in Molecular Genetics, with a focus on Bioinformatics from the Federal University of Pernambuco, Brazil, in 2019. During her PhD, she had the chance to collaborate with the university of Luxembourg and the McGill university in Quebec Canada for a short time. Ever since she has been involved with teaching and research and Since March 2022, she joined VIB with the mission of teaching and assist other trainers in a variety of topics.

Contact Bruna Piereck :
Alexander Botzki
VIB Training & Conferences / ELIXIR, BE

Alexander Botzki at the Flemish Institute of Biotechnology, Belgium has with his group the mission of providing technology training in domains of VIB Technologies, Bioinformatics & AI, Software Development, and Research Data Management. Between 2014 and 2022, he was head of the VIB Bioinformatics Core. From September 2009 to July 2014, he was responsible for the roll-out of E-Notebook (electronic lab notebook) to VIB's researchers within 75 research groups.

Before joining VIB, Alexander worked on various computational biology projects for Algonomics (bought by Lonza, 2008-2009) and DevGen (now Syngenta, from 2006-2008). During Alexander's PostDoc at Sanofi Aventis in Strasbourg, he executed various virtual screening campaigns on the compound selection of the merged enterprise. He received his doctoral degree with the group of Prof. Dr. Armin Buschauer (University of Regensburg, Germany) on 'Structure-based design of hyaluronidase inhibitors'.

Contact Alexander Botzki :
James Collier
VIB Metabolomics Core Leuven, BE

I am a software engineer with over 10 years of professional experience on systems ranging from tiny embedded medical microchips, through to web applications and high-performance supercomputers. I grew up in a small town in rural Australia then completed a PhD at Monash University applying information compression to the protein structural alignment problem. Now I live in the Netherlands with my lovely wife and three children. Currently, I work for VIB Technologies building web applications. You can find out more about me here: https://james.thecolliers.xyz/

Contact James Collier :

Program

Configurations & Introduction
-
Coffe Break
-
Routine usage part 1 (status-stage-commit)
-
Lunch
-
History & Versions
-
From Git to GitHub
-
Coffe Break
-
Collaborating in GitHub
-
Recap from 1st day
-
Experimenting Risk Free: What are Branchs in Git & GitHub
-
Coffe Break
-
Experimenting Risk Free: Working with Branchs
-
Lunch
-
Solving Conflicts
-
Coffee Break
-
Changing an old version - Another way of Branching
-
Coffee Break
-
Forking
-

Practical info

Location & Venue

11 September 2023 - 12 September 2023

Leuven - Park Inn by Radisson

Martelarenlaan 36
3010 Leuven
Belgium

Public transport

11 September 2023 - 12 September 2023

Leuven - Park Inn by Radisson
Public transport

The hotel is located 300m from Leuven Central Station, just a short 5 minute walk.

Bike

11 September 2023 - 12 September 2023

Leuven - Park Inn by Radisson
Bike

Bike parking Leuven

Using your bike for longer distances? Check Cycle Highways.

Route description

11 September 2023 - 12 September 2023

Leuven - Park Inn by Radisson
Parking

Underground P1-Parking Station Leuven, Martelarenlaan 4, 3010 Leuven or parking De Bond, Martelarenlaan 18, 3010 Leuven.

Venue contact

11 September 2023 - 12 September 2023

Leuven - Park Inn by Radisson
Location contact

+32 16 61 66 02

sales.leuven@parkinn.com

Extra information

Info for trainer
Elixir code: (to be registered)