Introduction to High Performance Computing (HPC): structure and practice

Introduction to High Performance Computing (HPC): structure and practice

17 October 2025

Ghent - VIB/UGent FSVM II | room L2

advanced bioinformatics
ELIXIR
programming
research data management
live training

Introduction to High Performance Computing (HPC): structure and practice

Target Audience:
VIB PhD student
VIB postdoc
VIB staff scientist
VIB group leader or expert
VIB administrative support
VIB technical support
Flemish academic or researcher
Non-Flemish academic or researcher
Industry professional
Location:

Ghent - VIB/UGent FSVM II | room L2

Duration:

17 October 2025, 13h00-17h00

General context

This course is part of a micro-credential track, which offers the added value of being akin to a mini-diploma. When following the full track, you will be able to improve the reproducibility of your research. 

Check this opportunity: Reproducible Data Analysis: an Essential Capability in Modern Science.

In this half-day introduction, you will have the opportunity to know a bit more about the structure of the HPC (tiers), what resources you have available, and most importantly, how to use and navigate the HPC. 

In this course, you will learn the differences and similarities between

  • VSC (Vlaams Supercomputer Centrum) instances in Gent and Leuven
  • VIB Data Core
  • And a glimpse of what you could find beyond.

Our goal is to help you easily adapt to any HPC system you encounter in your professional life.

Learning outcomes
  • Describe differences and similarities among HPC Tiers and usage
  • Access existing HPC infrastructures in Flanders, such as VSC and VIB Data Core
  • Use the different environments in the HPC (storage, analysis, and debug)
  • Querying and using modules and their versions in the HPC
  • Submit jobs to use software and scripts on the cluster
  • Check information about submitted jobs
Required skills

Some basic knowledge of the command-line is STRONGLY advised for this course (e.g., this tutorial). 

Trainers

Bruna Piereck
VIB Training & Conferences - Trainer picture - Bruna Piereck
VIB Training & Conferences / ELIXIR, BE

Bruna Piereck is a bioinformatics trainer at VIB and ELIXIR-BE training coordinator deputy. She obtained a Master and PhD degree in Molecular Genetics, with a focus on Bioinformatics from the Federal University of Pernambuco, Brazil, in 2019. During her PhD, she had the chance to collaborate with the university of Luxembourg and the McGill university in Quebec Canada for a short time. Ever since she has been involved with teaching and research and Since March 2022, she joined VIB with the mission of teaching and assist other trainers in a variety of topics.

Contact Bruna Piereck :
Boris Depoortere
VIB Training & Conferences - Trainer picture - Boris Depoortere
VIB Data Core, ELIXIR, BE

Boris Depoortere is a bioinformatician who has been strengthening the Compute Team of Data Core since November 2023. After his BSc degree in Biochemistry at HOGENT, he went on to combine his interests in information technology and life sciences by pursuing an advanced bachelor's in bioinformatics at HOWEST. This included a fruitful internship at the Swedish University of Agricultural Sciences, where he created and computed a custom genomic workflow on the institute's HPC (UPPMAX). 
  
Currently, Boris works on the VIB Data Core Compute Cluster to improve the overall user experience. He administers the Belgian Galaxy instance (usegalaxy.be), which is hosted on Flemish Supercomputer Centre (VSC) resources. The users of the services he is part of can always count on his unconditional support and devotion to solve problems. 

Contact Boris Depoortere :

Program

-
  • Introduction
  • Accessing in the terminal and on demand
  • Interactive sessions (debug and testing)
  • Querying and using modules in the HPC
  • Submitting and managing jobs

Practical info

Location & Venue

17 October 2025

Ghent - VIB/UGent FSVM II

Technologiepark 75
9052 Zwijnaarde
Belgium

Public transport

17 October 2025

Ghent - VIB/UGent FSVM II
Public transport

From Ghent Sint-Pieters station, you can take a bus to Technologiepark. Please check Routeplanner De Lijn for schedules.

Bike

17 October 2025

Ghent - VIB/UGent FSVM II
Bike

Looking for a custom cycling route? Try the online cycling route planner to easily and quickly identify the fastest, safest and/or most scenic route to any destination in Ghent.
Cycling route planner
 

Shared bicycles:

Several providers are active in the area.
Take a look at their platforms:
- Indigo Weel Pro app
- Bluebike
- DOTT
- BOLT eBikes
- Donkey Republic

There are also some public bicycle pumps at the park.

Route description

17 October 2025

Ghent - VIB/UGent FSVM II
Parking

Route description

There is only one entrance to Technologiepark. At the entrance, please take a ticket  - Parking is only allowed in regular parking spots (for instance in front of the building) and in the parking tower. Parking alongside the roads or in other places where there is no regular parking is prohibited.

Venue contact

17 October 2025

Ghent - VIB/UGent FSVM II