Label-free Proteomics data analysis in Galaxy

Label-free Proteomics data analysis in Galaxy

basic bioinformatics
ELIXIR
Location:

Bio-Accelerator, Tech Lane Ghent.

Start date:

03 December 2020

General context

Galaxy software framework is an open-source application. It is a system that enables researchers without informatics expertise to perform computational biology analyses through the web. 

This hands-on workshop aims to familiarize you with the Galaxy user interface & execute (label-free) proteomics data-analysis. The course will be taught by Melanie Föll and Matthias Fahrner from the Institute of Molecular Medicine and Cell Research from the University of Freiburg. 

Objectives

In the first part we will introduce you to the Galaxy platform. It will teach you how to perform basic tasks such as importing data, running tools, working with histories, creating workflows, and sharing your work.

The proteomics data analysis part comprises label-free data dependent analysis with MaxQuant and label-free data independent acquisition analysis (DIA) with i.a. OpenSwath. A detailed program will be provided shortly. 

Event intended for

Biologists and other life science researchers who would like an introduction to Galaxy, its workflows and use it for proteomics analysis.

Required skills

No prior bioinformatics knowledge is required, however is definitely helpful/recommended to get more out of the course. 

Trainers

Melanie Föll
University of Freiburg - Institute for Molecular Medicine and Cell Research.
Matthias Fahrner
University of Freiburg - Institute of Molecular Medicine and Cell Research

Program

Working with Galaxy user interface

Label-free data dependent analysis

Label-free data independent acquisition analysis

Practical info

Location & Venue

03 December 2020 - 04 December 2020

Bio-Accelerator Meeting Center Ghent

Technologiepark 21
9052 Zwijnaarde
Belgium

Public transport

03 December 2020 - 04 December 2020

Bio-Accelerator Meeting Center Ghent
Public transport

Itineraries:

At Gent St Pieters station you can take the following city buses: Buses 70, 71 and 72 ("Tramstraat"). You get off at the stop marked "Bollebergen" (on the Grote Steenweg Noord). The Technology Park is straight in front of you on the other side of the soft verge.

There is also a shuttle bus from Gent-Sint-Pieters, more information can be found here.

 

Route description

03 December 2020 - 04 December 2020

Bio-Accelerator Meeting Center Ghent
Parking

Route description

There is free parking available in front of the building.

Venue contact

03 December 2020 - 04 December 2020

Bio-Accelerator Meeting Center Ghent
Location contact

+32 9 328 19 02

info@bio-accelerator.com