Migrating tools to the cloud - online

advanced bioinformatics
online
ELIXIR
live training

Migrating tools to the cloud - online

Target Audience:
All VIB staff
Location:

online

General context

This workshop will show you the possibilities and the pitfalls of transferring software tools to the cloud using real-life examples.  Four scientists will testify about their experiences with implementing the tool that was developed in their lab in the cloud. We will end the workshop with a panel discussion

Trainers

Alexander Botzki
VIB Training & Conferences / ELIXIR, BE

Alexander Botzki at the Flemish Institute of Biotechnology, Belgium has with his group the mission of providing technology training in domains of VIB Technologies, Bioinformatics & AI, Software Development, and Research Data Management. Between 2014 and 2022, he was head of the VIB Bioinformatics Core. From September 2009 to July 2014, he was responsible for the roll-out of E-Notebook (electronic lab notebook) to VIB's researchers within 75 research groups.

Before joining VIB, Alexander worked on various computational biology projects for Algonomics (bought by Lonza, 2008-2009) and DevGen (now Syngenta, from 2006-2008). During Alexander's PostDoc at Sanofi Aventis in Strasbourg, he executed various virtual screening campaigns on the compound selection of the merged enterprise. He received his doctoral degree with the group of Prof. Dr. Armin Buschauer (University of Regensburg, Germany) on 'Structure-based design of hyaluronidase inhibitors'.

Contact Alexander Botzki :

Program

14h00-14h35 Living on the edge: reproducible RNA-seq data analysis using nf-core and Kubernetes on Azure by Alexander Botzki

14h35-15h10: Galaxy on the Cloud by Ignacio Eguinoa

15h10-15h25 Break

15h25-16h00 PLAZA-cloud: comparative genomics on demand by Michiel Van Bel

16h00-16h35 Orchestra: a cloud platform for hands-on computational workshops by Sean Davis

16h35-17h15 Panel discussion