Proteomics bioinformatics

Proteomics bioinformatics

06 July 2026 - 10 July 2026

EMBL's European Bioinformatics Institute (EMBL-EBI)

basic bioinformatics
ELIXIR
hands-on
live training

Proteomics bioinformatics

Target Audience:
VIB PhD student
VIB postdoc
VIB staff scientist
VIB group leader or expert
VIB technical support
Flemish academic or researcher
Non-Flemish academic or researcher
Industry professional
Location:

EMBL's European Bioinformatics Institute (EMBL-EBI)

Duration:

6 July 2026, 10h00 - 19h30

7 July 2026, 08h15 - 19h00

8 July 2026, 08h15 - 18h30

9 July 2026, 08h15 - 19h00

10 July 2026, 08h15 - 15h45

General context

This course provides hands-on training in the basics of mass spectrometry (MS) and proteomics bioinformatics. You will receive training on how to use search engines and post-processing software, quantitative approaches, MS data repositories, the use of public databases for protein analysis, annotation of subsequent protein lists, and incorporation of information from molecular interaction and pathway databases. 

The practical elements of the course will take raw data from a proteomics experiment and analyse it. You will be able to go from MS aspectra to identifying and quantifying peptides, and finally obtaining lists of protein identifiers that can be analysed further using a wide range of resources. The final aim is to provide you with the practical bioinformatics knowledge you need to go back to the lab and process your data when collected. 

Learning outcomes

After completing the course, you will be able to: 

  • Use and summarize bioinformatics tools to analyse shotgun proteomics data, involving identification and quantification approaches
  • Browse, search, submit, retrieve, and re-use proteomics data from widely used public proteomics data repositories
  • Evaluate the strengths and weaknesses of several experimental and bioinformatics analysis approaches
  • Use tools to perform annotation of lists of proteins
Approach

Pre-recorded material may be provided before the course starts that you will need to watch, read, or work through to gain the most out of the actual training event. 

Software demonstrated
  • MS proteomics repositories, including PRIDE and PRIDE-related tools and ProteomeXchange
  • Protein interaction data through InACt and IMEX resources
  • UniProt for proteomics applications

Practical info

Location & Venue

06 July 2026 - 10 July 2026

EMBL's European Bioinformatics Institute (EMBL-EBI)

Campus, EMBL-EBI Main Building, Wellcome Genome, Hinxton , United Kingdom
WJ Hinxton, Saffron Walden, UK
CB10 1SD
United Kingdom

Public transport

06 July 2026 - 10 July 2026

EMBL's European Bioinformatics Institute (EMBL-EBI)
Public transport

No public transport information has been provided for this location.

Bike

06 July 2026 - 10 July 2026

EMBL's European Bioinformatics Institute (EMBL-EBI)
Route description

06 July 2026 - 10 July 2026

EMBL's European Bioinformatics Institute (EMBL-EBI)
Parking

No parking information has been provided for this location.

Venue contact

06 July 2026 - 10 July 2026

EMBL's European Bioinformatics Institute (EMBL-EBI)
Location contact

No contact information for this location has been provided.