Proteomics bioinformatics
Proteomics bioinformatics
6 July 2026, 10h00 - 19h30
7 July 2026, 08h15 - 19h00
8 July 2026, 08h15 - 18h30
9 July 2026, 08h15 - 19h00
10 July 2026, 08h15 - 15h45
General context
This course provides hands-on training in the basics of mass spectrometry (MS) and proteomics bioinformatics. You will receive training on how to use search engines and post-processing software, quantitative approaches, MS data repositories, the use of public databases for protein analysis, annotation of subsequent protein lists, and incorporation of information from molecular interaction and pathway databases.
The practical elements of the course will take raw data from a proteomics experiment and analyse it. You will be able to go from MS aspectra to identifying and quantifying peptides, and finally obtaining lists of protein identifiers that can be analysed further using a wide range of resources. The final aim is to provide you with the practical bioinformatics knowledge you need to go back to the lab and process your data when collected.
After completing the course, you will be able to:
- Use and summarize bioinformatics tools to analyse shotgun proteomics data, involving identification and quantification approaches
- Browse, search, submit, retrieve, and re-use proteomics data from widely used public proteomics data repositories
- Evaluate the strengths and weaknesses of several experimental and bioinformatics analysis approaches
- Use tools to perform annotation of lists of proteins
Pre-recorded material may be provided before the course starts that you will need to watch, read, or work through to gain the most out of the actual training event.
- MS proteomics repositories, including PRIDE and PRIDE-related tools and ProteomeXchange
- Protein interaction data through InACt and IMEX resources
- UniProt for proteomics applications
Practical info
06 July 2026 - 10 July 2026
EMBL's European Bioinformatics Institute (EMBL-EBI)
Campus, EMBL-EBI Main Building, Wellcome Genome, Hinxton , United Kingdom
WJ Hinxton, Saffron Walden, UK
CB10 1SD
United Kingdom
06 July 2026 - 10 July 2026
EMBL's European Bioinformatics Institute (EMBL-EBI)
No public transport information has been provided for this location.
06 July 2026 - 10 July 2026
EMBL's European Bioinformatics Institute (EMBL-EBI)
06 July 2026 - 10 July 2026
EMBL's European Bioinformatics Institute (EMBL-EBI)
No parking information has been provided for this location.
06 July 2026 - 10 July 2026
EMBL's European Bioinformatics Institute (EMBL-EBI)
No contact information for this location has been provided.