PROTrEIN 2nd Winter School Ghent
General context
Run jointly with EMBL-EBI, this workshop provides hands-on training in the basics of mass spectrometry and proteomics bioinformatics, search engines and post-processing software, quantitative approaches, MS data repositories, the use of public databases for protein analysis, annotation of subsequent protein lists and incorporation of information from molecular interaction and pathway databases.
Program
- Sunday February 26th
- Monday February 27th
- Tuesday February 28th
- Wednesday March 1st
- Thursday March 2nd
- Friday March 3rd
- Monday March 6th
- Tuesday March 7th
19h: Welcome dinner
9h30–9h35 Welcome
9h35–10h00 Robbin Bouwmeester (UGent): ProteomicsML: An Online Platform for Community-Curated Datasets and Tutorials for Machine Learning in Proteomics
10h00–10h30 tba
10h30–11h00 tba
11h00–11h15 Coffee break
11h15–11h50 Maarten Dhaenens (UGent): A comprehensive LFQ benchmark dataset on modern-day acquisition strategies in proteomics
11h50–12h30 Mathias Wilhelm (Technical University of Munich): ProteomicsDB: a multi-omics and multi-organism resource for life science research
12h30-13h00 Lunch
13h00–17h00: workshop by Mathias Wilhelm, Python framework for Deep Learning in Proteomics (DLOmix)
9h30-12h00 workshop by Veit Stefan Schwämmle, protein inference and quantitative clustering
12h00-13h00 Lunch
13h00-17h00 workshop by Veit Stefan Schwämmle, protein complex analysis excluding and including PTMs
9h30-12h00 ELISAVA video recordings and poster design training
12h00-13h00 Lunch
13h00-17h00 ELISAVA video recordings and poster design training
9h30-12h00 workshop by Lieven Clement (statOmics, UGent), proteomics differential analysis
12h00-13h00 Lunch
13h00-17h00 workshop by Lieven Clement (statOmics, UGent), proteomics differential analysis
18h00–22h30: Walking dinner in Ghent city
9h30-12h00 workshop by Kalpana Panneerselvam and Eliot Ragueneau (EMBL-EBI), Intact database (protein-protein interactions)
12h00-13h00 Lunch
13h00-17h00 workshop by Kalpana Panneerselvam and Eliot Ragueneau (EMBL-EBI), Cytoscape tool, Reactome database (pathway analysis)
9h30-12h00 Hands-on training at the VIB Proteomics Core (Prof. Francis Impens)
12h00-13h00 Lunch
13h00-17h00 Hands-on training at the VIB Proteomics Core (Prof. Francis Impens)
9h30-12h00 Hands-on training at the VIB Proteomics Core (Prof. Francis Impens)
12h00-13h00 Lunch
13h00-17h00 Hands-on training at the VIB Proteomics Core (Prof. Francis Impens)
Practical info
27 February 2023 - 07 March 2023
Ghent - VIB/UGent FSVM II
Technologiepark 75
9052 Zwijnaarde
Belgium
27 February 2023 - 07 March 2023
Ghent - VIB/UGent FSVM II
From Ghent Sint-Pieters station, you can take bus 49, 50 or 70 to Technologiepark. Please check Routeplanner De Lijn for schedules.
27 February 2023 - 07 March 2023
Ghent - VIB/UGent FSVM II
There is only one entrance to Technologiepark. At the entrance, please take a ticket and have it validated at the reception desk of the FSVM building. Parking will only be allowed in regular parking spots (for instance in front of the building) and in the new parking tower. Parking alongside the roads or in other places where there is no regular parking is prohibited and after initial warnings, fines will be issued (€ 50).