QuPath: Quantitative Pathology & Bioimage Analysis Software
29 March 2024, 9h30-16h30
General context
This one-day workshop is aimed to use QuPath, an open-source software for bioimage processing and analysis of slide scanner images.
A dedicated time will be used to analyze some of the participants dataset, so please contact the organizers if you would like to bring your own data to process/analyze.
- Overview of QuPath: manage images, annotations, general concepts
- Cell Segmentation
- Pixel classification
- Feature extractions
- Object classification
- Basics of scripting in QuPath to batch process
This course is intended for researchers who are using or planning to use a slide scanner and would like to process and analyze their data.
None. Participants are requested to bring their own laptop, QuPath pre-installed.
QuPath
Trainers
Benjamin Pavie
Amanda Gonçalves
Amanda is a Microscopy Expert at the VIB Bioimaging Core-Gent, where since 2011, she has gained expertise in large sample imaging and quantification, from slide scanner to light sheet. She also has over 15 years of experience teaching science, both practical and theoretical, on the graduate and post graduate levels.
Program
QuPath basic
QuPath scripting + User dataset analysis
Practical info
29 March 2024
Leuven - Campus Gasthuisberg
Herestraat 49
3000 Leuven
Belgium
29 March 2024
Leuven - Campus Gasthuisberg
Please use Parking West - Follow 'Dagcentrum Onco' to get to the O&N buildings. Take the stairs on you left after exiting Parking West. You are now in front of buidling O&N4 and on the left you find O&N5.
29 March 2024
Leuven - Campus Gasthuisberg
building O&N5 - room 5th floor room 404-28.05.347