QuPath: Quantitative Pathology & Bioimage Analysis Software
7 June 2024, 9h30-16h30
General context
This one-day workshop is aimed to use QuPath, an open-source software for bioimage processing and analysis of slide scanner images.
A dedicated time will be used to analyze some of the participants dataset, so please contact the organizers if you would like to bring your own data to process/analyze.
- Overview of QuPath: manage images, annotations, general concepts
- Cell Segmentation
- Pixel classification
- Feature extractions
- Object classification
- Basics of scripting in QuPath to batch process
This course is intended for researchers who are using or planning to use a slide scanner and would like to process and analyze their data.
None. Participants are requested to bring their own laptop, QuPath pre-installed.
QuPath
Trainers
Benjamin Pavie
Bob Asselbergh
Bob is staff scientist at the VIB Center for Molecular Neurology’s Bio-Imaging Expertise Unit, with an interest in quantitative fluorescence assays, automated high throughput microscopy and superresolution expansion microscopy.
Program
QuPath basic
QuPath scripting + User dataset analysis
Practical info
07 June 2024
Antwerp - Campus Drie Eiken UAntwerpen
Universiteitsplein 1
2610 Antwerpen
Belgium