Reproducibility in practice

Reproducibility in practice

28 February 2025

Ghent-VIB/UGent FSVM II 

Micro-credential
ELIXIR
research data management
live training

Reproducibility in practice

Target Audience:
VIB PhD student
VIB postdoc
VIB staff scientist
VIB group leader or expert
VIB administrative support
VIB technical support
Flemish academic or researcher
Non-Flemish academic or researcher
Industry professional
Location:

Ghent-VIB/UGent FSVM II 

Duration:

28 February 2025, 9h30-17h00

General context

This course is part of a micro-credential track, a micro-credential has the added value of being like a mini-diploma. When following the full track you will become able to improve the reproducibility of your research. Check this opportunity : Reproducible Data Analysis: an Essential Capability in Modern Science.

Join us in to brainstorm the challenges and solutions of data analysis reproducibility. 

You will have the chance to brainstorm, discuss and use your creativity to solve real life projects with a group of people. No matter your background and level of expertise this is a great opportunity of exchange, improving critical thinking, problem solving and exchange with experts.

After a morning of exchange you will have the chance to hear the how the experts have tackled each challenge and to ask questions to discover more about their thinking process. 

It will be a fun activity with opportunities for networking and to think of your own challenges while taking the chance to expand your creativity and talking to people that have been navigating this water for a little longer.

Learning outcomes
  • Expand your way to think of data analysis reproducibility
  • Work on problem solving of real cases
  • Improve critical thinking by discussing with colleagues
  • Networking opportunity
  • Data analysis reproducibility awareness
Event intended for

Trainers

Bruna Piereck
VIB Training & Conferences - Trainer picture - Bruna Piereck
VIB Training & Conferences / ELIXIR, BE

Bruna Piereck is a bioinformatics trainer at VIB and ELIXIR-BE training coordinator deputy. She obtained a Master and PhD degree in Molecular Genetics, with a focus on Bioinformatics from the Federal University of Pernambuco, Brazil, in 2019. During her PhD, she had the chance to collaborate with the university of Luxembourg and the McGill university in Quebec Canada for a short time. Ever since she has been involved with teaching and research and Since March 2022, she joined VIB with the mission of teaching and assist other trainers in a variety of topics.

Contact Bruna Piereck :
Alexander Botzki
VIB Training & Conferences / ELIXIR, BE

Alexander Botzki at the Flemish Institute of Biotechnology, Belgium has with his group the mission of providing technology training in domains of VIB Technologies, Bioinformatics & AI, Software Development, and Research Data Management. Between 2014 and 2022, he was head of the VIB Bioinformatics Core. From September 2009 to July 2014, he was responsible for the roll-out of E-Notebook (electronic lab notebook) to VIB's researchers within 75 research groups.

Before joining VIB, Alexander worked on various computational biology projects for Algonomics (bought by Lonza, 2008-2009) and DevGen (now Syngenta, from 2006-2008). During Alexander's PostDoc at Sanofi Aventis in Strasbourg, he executed various virtual screening campaigns on the compound selection of the merged enterprise. He received his doctoral degree with the group of Prof. Dr. Armin Buschauer (University of Regensburg, Germany) on 'Structure-based design of hyaluronidase inhibitors'.

Contact Alexander Botzki :
Bart Mesuere
bart mesure
University of Ghent, BE

Professor of Big Data Science.
Specialties: algorithms, data structures, web development, data visualization, computational biology, bioinformatics, computational metaproteomics

Contact Bart Mesuere :
Nicolas Vannieuwkerke
CMGG (UZ Ghent), BE

Nicolas Vannieuwkerke is a bioinformatician at CMGG (UZ Ghent) who mainly focuses on developing and maintaining Nextflow pipelines for the diagnostic NGS analyses. He is a very active member of the Nextflow community as a Nextflow ambassador and is part of the nf-core core team. Nf-core is the largest Nextflow community that creates and maintains a number of best-practice pipelines and developer resources.

Celine Everaert
VIB Training & Conferences - Trainer picture - Celine Everaert
VIB-UGent Center for Medical Biotechnology, BE

Assistant Professor at UGent, with expertise in Translational Onco-genomics and Bio-informatics lab. She has experience with Using bioinformatics , exploring big data and to developing new cancer therapeutics and biomarker tests. Currently she is focussing on scRNA-seq to distinguish immune therapy responders.

Program

Brainstorm reproducibility solutions for real projects (invited speakers projects)

Listening and discussion the invited speakers final solutions

Practical info

Location & Venue

28 February 2025

Ghent - VIB/UGent FSVM II

Technologiepark 75
9052 Zwijnaarde
Belgium

Public transport

28 February 2025

Ghent - VIB/UGent FSVM II
Public transport

From Ghent Sint-Pieters station, you can take a bus to Technologiepark. Please check Routeplanner De Lijn for schedules.

Bike

28 February 2025

Ghent - VIB/UGent FSVM II
Bike

Looking for a custom cycling route? Try the online cycling route planner to easily and quickly identify the fastest, safest and/or most scenic route to any destination in Ghent.
Cycling route planner
 

Shared bicycles:

Several providers are active in the area.
Take a look at their platforms:
- Indigo Weel Pro app
- Bluebike
- DOTT
- BOLT eBikes
- Donkey Republic

There are also some public bicycle pumps at the park.

Route description

28 February 2025

Ghent - VIB/UGent FSVM II
Parking

Route description

There is only one entrance to Technologiepark. At the entrance, please take a ticket  - Parking is only allowed in regular parking spots (for instance in front of the building) and in the parking tower. Parking alongside the roads or in other places where there is no regular parking is prohibited.

Venue contact

28 February 2025

Ghent - VIB/UGent FSVM II
Extra information

FSVM II, room L5 on the 5th floor