How to start with spatial omics?
How to start with spatial omics?
21 April 2023
General context
This training is a joint effort of VIB Technologies intended for scientists who want to make the leap into the field of spatial omics.
The training will show:
- an overview of the different spatial omics platforms that are available in VIB and a short description of the underlying technology
- a comparison of the characteristics of the platforms to help you decide which platform is best for solving your research question
- info on how to get started with spatial omics: where are the machines, how can you use them, what is the cost of using them, how to prepare your samples, how to select a panel of target genes/proteins...
- testimonies of VIB users of these spatial omics platforms
There will be ample opportunities for discussion and questions to more experienced users. In this way, we hope to start building a spatial omics community in VIB.
Note: Analysis of spatial omics data will not be covered directly, but will be subject of a training later this year.
Trainers
Evelien Van Hamme
Birthe Haest
Birthe Haest is a PhD student in the laboratory of Myeloid Cell Biology in Tissue Homeostasis and Regeneration of Prof Martin Guilliams at Flanders Institute for Biotechnology (VIB)-UGent Center for Inflammation Research. In 2019, she obtained her Master degree in Biochemistry and Biotechnology at Ghent University. For her master’s thesis she went to Maynooth, Ireland, to study macrophage activation. In 2022, the proteogenomic atlas of human and murine liver was published in Cell. This was a huge collaborative effort between the Guilliams and Scott labs in which Birthe took part. Currently, she is investigating the cell-cell interactions that drive liver regeneration.
Bart Ghesquière
Hilde Nelissen
My research career has focused on the central biological question: How do growth processes determine final plant organ size? Initially, I approached this using molecular biology studying Arabidopsis leaf development. As my interest shifted towards applied research, I redirected my focus to maize. What started as translational research to bring knowledge from Arabidopsis to crops and from the lab to the field, gradually developed into a research line with the goal to decipher the instructor networks that govern leaf size, organ growth and ultimately yield in maize. Because plant organ size control is an important yield component that is also severely impacted by climate change, our ultimate goal is to deepen our understanding of the growth-regulatory networks to enhance our success rate to achieve climate-resilient crops.
Program
9h30-11h00 overview of platforms, their characteristics, pros and cons
11h00-11h15 break
11h15-12h00 how to get started with spatial omics
12h00-12h30 what to consider specifically for plant samples
12h30-13h30 lunch
13h30-14h00 how to design gene/protein panels
14h00-14h30 how to start with spatial metabolomics
14h30-15h30 cookies and informal talks with experienced users
15h30-16h00 Q&A session and conclusion
Practical info
21 April 2023
Ghent - VIB/UGent FSVM II
Technologiepark 75
9052 Zwijnaarde
Belgium
21 April 2023
Ghent - VIB/UGent FSVM II
From Ghent Sint-Pieters station, you can take bus 49, 50 or 70 to Technologiepark. Please check Routeplanner De Lijn for schedules.
21 April 2023
Ghent - VIB/UGent FSVM II
There is only one entrance to Technologiepark. At the entrance, please take a ticket and have it validated at the reception desk of the FSVM building. Parking will only be allowed in regular parking spots (for instance in front of the building) and in the new parking tower. Parking alongside the roads or in other places where there is no regular parking is prohibited and after initial warnings, fines will be issued (€ 50).